com.openinventor.volumeviz.nodes

Class SoVolumeTransform

java.lang.Object

com.openinventor.inventor.Inventor

com.openinventor.inventor.misc.SoBase

com.openinventor.inventor.fields.SoFieldContainer

com.openinventor.inventor.nodes.SoNode

com.openinventor.volumeviz.nodes.SoVolumeTransform

All Implemented Interfaces:

SafeDisposable

public abstract class SoVolumeTransform
extends SoNode

Transform data before texture creation. The SoVolumeTransform node allows an application to apply a defined computation on LDM data tiles just before they are sent to the GPU. There are several other ways to apply a computation to LDM tiles, that are applied at different stages of the pipeline. The SoLDMDataTransform class for example (see the dataTransform field of SoDataSet) applies a computation to each LDM tile requested from the volume reader before the tile is stored in system memory. This can be used to create multiple data sets from a single input (e.g. on disk) data set, but has the drawback that each resulting data set must be stored in system memory. SoVolumeTransform can be used to create multiple data sets from a single data set in system memory and does not require storing the created data sets in system memory (only on the GPU).

A cache mechanism, local to each instance of SoVolumeTransform, allows storing the computed tiles for later reuse. The size of this cache (number of tiles to cache) can be specified using the cacheSize field. We recommend setting the cacheSize to the number of tiles needed to display the biggest expected slice. As an example, for a dataset of size 128x512x1024 with a tile size equal to 128, the biggest slice size is 512x1024. So 4x8 = 32 LDM tiles are needed for rendering and therefore a cacheSize of 32 (tiles) is needed to avoid computing the same tile multiple times. The apply method can retrieve the transformed data for other tiles from the cache and can explicitly add the transformed data for other tiles to the cache.

SoVolumeTransform works on tiles (not slices or volumes). If a compute function needs data from other tiles, the application may use the SoLDMDataAccess API to get that data. (This is another difference from SoLDMDataTransform, which does not allow using the LDM data access API.)

Multiple SoVolumeTransform nodes may be applied to the same SoDataSet. The transforms are applied in the order of their appearance in the scene graph. SoVolumeTransform nodes may also be applied only to a specific SoDataSet using the volumeTransformId field. If this field is zero (the default), the transform is applied to all subsequent data set nodes. Else the transform is only applied to data sets whose dataSetId field contains the same value as the volumeTransformId.

SoVolumeTransform is based on the Open Inventor computing framework and uses the SoBufferObject classes to abstract and manage blocks of memory. The application can use different devices to implement the computation, and manage input tiles and output tiles stored on different devices.

As mentioned previously, SoVolumeTransform can be used to create multiple data sets on-the-fly from a single data set in system memory. In this case the same data set node will be instanced multiple times in the scene graph (although its data will only be loaded in system memory once), but we still need to assign each data texture a unique id so the shader program can access them uniquely. This is done using SoDataSetId nodes to specify a different data set id for each instance of the data set node. If an SoDataSetId node is in the traversal state when a data set node is traversed, the dataSetId field is ignored and the id from the SoDataSetId node is used.

To implement a computation, the application must derive a new class from SoVolumeTransform and (at least) implement the apply() method, which performs the actual computation. This method is called with parameters that give access to information about the data set and the specific tile being computed. In a simple case you might only need to access the buffer object.

It may also be useful to implement the isValid() and getTransformedMinMax() methods. The isValid() method will be called for each tile immediately before the apply() method. If this method returns false, then the apply() method will not be called for that tile. If the application can compute or estimate the min and max values of the computed data set, then it should implement the getTransformedMinMax() method so VolumeViz does not do unnecessary work to compute these values.

File format/default:

VolumeTransform {

volumeTransformId	0
cacheSize	1

}

Action behavior:

SoCallbackAction, SoGLRenderAction
Sets volume transform parameters in the traversal state.

See also:

SoDataSet, SoDataSetId, SoVolumeData

Nested Class Summary

Nested classes/interfaces inherited from class com.openinventor.inventor.Inventor

Inventor.ConstructorCommand

Field Summary

Fields

Modifier and Type	Field and Description
SoSFInt32	cacheSize Size of the computed tile cache for this transform.
SoSFShort	volumeTransformId Allows the transform to be applied to all or one specific data set.

Fields inherited from class com.openinventor.inventor.Inventor

VERBOSE_LEVEL, ZeroHandle

Method Summary

Modifier and Type	Method and Description
void	addInCache(SoLDMTileID tileID, SoBufferObject bufferObject) Add the transformed data for a specific tile to the cache.
SoBufferObject	getFromCache(SoLDMTileID tileID) Returns the previously transformed data for a specific tile.
double[]	getTransformedMinMax() Based on min max of the input data, this function should return the expected data range of the result (transformed) data.

Methods inherited from class com.openinventor.inventor.nodes.SoNode

affectsState, callback, copy, copy, distribute, doAction, getAlternateRep, getBoundingBox, getByName, getMatrix, getPrimitiveCount, getRenderUnitID, GLRender, GLRenderBelowPath, GLRenderInPath, GLRenderOffPath, grabEventsCleanup, grabEventsSetup, handleEvent, isBoundingBoxIgnoring, isOverride, pick, rayPick, search, setOverride, touch, write

Methods inherited from class com.openinventor.inventor.fields.SoFieldContainer

copyFieldValues, copyFieldValues, enableNotify, fieldsAreEqual, get, getAllFields, getEventIn, getEventOut, getField, getFieldName, hasDefaultValues, isNotifyEnabled, set, setToDefaults

Methods inherited from class com.openinventor.inventor.misc.SoBase

dispose, getEXTERNPROTO, getName, getPROTO, isDisposable, isSynchronizable, setName, setSynchronizable

Methods inherited from class com.openinventor.inventor.Inventor

getAddress, getNativeResourceHandle, startInternalThreads, stopInternalThreads

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

volumeTransformId

public final SoSFShort volumeTransformId

Allows the transform to be applied to all or one specific data set.
A volume transform id of 0 means that this transform will be applied to all subsequent data sets. A value greater than 0 means that this transform will only be applied to data sets with a matching data set id. For example, if the transform id is 1, the transform will only be applied to data sets whose data set id is also 1. The default value is 0.

cacheSize

public final SoSFInt32 cacheSize

Size of the computed tile cache for this transform.
This is the number of computed tiles that will be cached and will not need to be recomputed. Choose a value to balance between memory usage and computing time. Default is 1.

Method Detail

addInCache

public void addInCache(SoLDMTileID tileID,
                       SoBufferObject bufferObject)

Add the transformed data for a specific tile to the cache.
It is not necessary to call this method for the current tile, it will be added to the cache automatically. This method is useful if the apply method computes transformed data for other tiles. These tiles can be saved in the cache to avoid recomputing them later.

getTransformedMinMax

public double[] getTransformedMinMax()

Based on min max of the input data, this function should return the expected data range of the result (transformed) data.

getFromCache

public SoBufferObject getFromCache(SoLDMTileID tileID)

Returns the previously transformed data for a specific tile.
This method is useful if the apply method depends on transformed data for other tiles, for example adjacent tiles. If the needed tiles have already been transformed and saved in the cache, then it is not necessary to recompute them. Returns NULL if the tile was not found in the cache. See also the cacheSize field.