com.openinventor.imageviz.engines.imageanalysis.morphometry

Class SoAverageSpaceThicknessQuantification3d

java.lang.Object

com.openinventor.inventor.Inventor

com.openinventor.inventor.misc.SoBase

com.openinventor.inventor.fields.SoFieldContainer

com.openinventor.inventor.engines.SoEngine

com.openinventor.imageviz.engines.SoImageVizEngine

com.openinventor.imageviz.engines.imageanalysis.morphometry.SoAverageSpaceThicknessQuantification3d

All Implemented Interfaces:

SafeDisposable

public class SoAverageSpaceThicknessQuantification3d
extends SoImageVizEngine

SoAverageSpaceThicknessQuantification3d engine The SoAverageSpaceThicknessQuantification3d engine measures the structure separation.

For an introduction, see section Morphometry.

This engine measures the structure separation. It represents the thickness of the spaces as defined by binarisation within the image. It can be calculated either from 2D images with model assumptions or directly in 3D. Applying the surface area-based models as for the SoAverageObjectThicknessQuantification3d engine, structure separation is calculated :

Parallel plate model :

Cylinder rod model :

where is total volume of image and is object volume.

Note: Each of the above definitions uses the corresponding definition of SoAverageObjectThicknessQuantification3d using plate or rod model.

Note: In practice in trabecular bone analysis it is unsafe to employ 2D model assumptions, especially because the "plate-like" or "rod-like" character of trabecular bone can change both between bone samples and from one end of a studied bone volume to the other (see SoStructureModelIndexQuantification3d).

See also:

SoAverageObjectThicknessQuantification3d, SoObjectLinearDensityQuantification3d, SoFragmentationIndexQuantification.

File format/default:

AverageSpaceThicknessQuantification3d {

inObjectImage	NULL
inMaskImage	NULL
model	PARALLEL_PLATE_MODEL

}

Library references: average_space_thickness

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	SoAverageSpaceThicknessQuantification3d.Models
static class	SoAverageSpaceThicknessQuantification3d.SbAverageSpaceThicknessDetail Results details of average space thickness global measure.

Nested classes/interfaces inherited from class com.openinventor.imageviz.engines.SoImageVizEngine

SoImageVizEngine.ComputeModes, SoImageVizEngine.EventArg, SoImageVizEngine.Neighborhood3ds

Nested classes/interfaces inherited from class com.openinventor.inventor.Inventor

Inventor.ConstructorCommand

Field Summary

Fields

Modifier and Type	Field and Description
static int	CYLINDER_ROD_MODEL Deprecated. Use SoAverageSpaceThicknessQuantification3d.Models.CYLINDER_ROD_MODEL instead.
SoSFImageDataAdapter	inMaskImage The binary image for the mask or empty (command looks for only inside).
SoSFImageDataAdapter	inObjectImage The input 3D binary image.
SoSFEnum<SoAverageSpaceThicknessQuantification3d.Models>	model The trabecular model.
SoImageVizEngineAnalysisOutput<SoAverageSpaceThicknessQuantification3d.SbAverageSpaceThicknessDetail>	outResult The output measure result.
static int	PARALLEL_PLATE_MODEL Deprecated. Use SoAverageSpaceThicknessQuantification3d.Models.PARALLEL_PLATE_MODEL instead.
static int	SPHERE_MODEL Deprecated. Use SoAverageSpaceThicknessQuantification3d.Models.SPHERE_MODEL instead.

Fields inherited from class com.openinventor.imageviz.engines.SoImageVizEngine

CONNECTIVITY_18, CONNECTIVITY_26, CONNECTIVITY_6, MODE_2D, MODE_3D, MODE_AUTO, onBegin, onEnd, onProgress

Fields inherited from class com.openinventor.inventor.Inventor

VERBOSE_LEVEL, ZeroHandle

Constructor Summary

Constructors

Constructor and Description
SoAverageSpaceThicknessQuantification3d() Constructor.

Method Summary

Methods inherited from class com.openinventor.imageviz.engines.SoImageVizEngine

abortEvaluate, isEvaluating, startEvaluate, waitEvaluate

Methods inherited from class com.openinventor.inventor.engines.SoEngine

copy, getByName, getOutput, getOutputName

Methods inherited from class com.openinventor.inventor.fields.SoFieldContainer

copyFieldValues, copyFieldValues, enableNotify, fieldsAreEqual, get, getAllFields, getEventIn, getEventOut, getField, getFieldName, hasDefaultValues, isNotifyEnabled, set, setToDefaults

Methods inherited from class com.openinventor.inventor.misc.SoBase

dispose, getEXTERNPROTO, getName, getPROTO, isDisposable, isSynchronizable, setName, setSynchronizable, touch

Methods inherited from class com.openinventor.inventor.Inventor

getAddress, getNativeResourceHandle, startInternalThreads, stopInternalThreads

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

PARALLEL_PLATE_MODEL

@Deprecated
public static final int PARALLEL_PLATE_MODEL

Deprecated. Use SoAverageSpaceThicknessQuantification3d.Models.PARALLEL_PLATE_MODEL instead.

CYLINDER_ROD_MODEL

@Deprecated
public static final int CYLINDER_ROD_MODEL

Deprecated. Use SoAverageSpaceThicknessQuantification3d.Models.CYLINDER_ROD_MODEL instead.

SPHERE_MODEL

@Deprecated
public static final int SPHERE_MODEL

Deprecated. Use SoAverageSpaceThicknessQuantification3d.Models.SPHERE_MODEL instead.

inObjectImage

public final SoSFImageDataAdapter inObjectImage

The input 3D binary image. Default value is NULL. Supported types include: binary image.

inMaskImage

public final SoSFImageDataAdapter inMaskImage

The binary image for the mask or empty (command looks for only inside). This parameter is optional. Default value is NULL. Supported types include: binary image.

model

public final SoSFEnum<SoAverageSpaceThicknessQuantification3d.Models> model

The trabecular model. . Default is PARALLEL_PLATE_MODEL

outResult

public final SoImageVizEngineAnalysisOutput<SoAverageSpaceThicknessQuantification3d.SbAverageSpaceThicknessDetail> outResult

The output measure result. Default value is NULL.

Constructor Detail

SoAverageSpaceThicknessQuantification3d

public SoAverageSpaceThicknessQuantification3d()

Constructor.